PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_67ECA2932.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 49aa    MW: 5753.52 Da    PI: 10.7822
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_67ECA2932.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.78.6e-121838222
                           --SS-EEEEEEE--TT-SS-E CS
                   WRKY  2 dDgynWrKYGqKevkgsefpr 22
                           +Dgy+WrKYG+K+vk+s++pr
  Traes_3AL_67ECA2932.1 18 EDGYKWRKYGKKSVKNSPNPR 38
                           8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-12539IPR003657WRKY domain
SuperFamilySSF1182907.85E-10939IPR003657WRKY domain
PROSITE profilePS5081113.1041249IPR003657WRKY domain
SMARTSM007745.2E-41749IPR003657WRKY domain
PfamPF031061.5E-71839IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    Send to blast
AASGKIAFRT RSEEEILEDG YKWRKYGKKS VKNSPNPRYP KRTNSFTFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-55HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689727.14e-15PREDICTED: probable WRKY transcription factor 50, partial
RefseqXP_002440727.19e-15hypothetical protein SORBIDRAFT_09g005700
RefseqXP_002440147.11e-14hypothetical protein SORBIDRAFT_09g026830
SwissprotQ8VWQ51e-13WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLW5CDH65e-29W5CDH6_WHEAT; Uncharacterized protein
STRINGSb09g005700.13e-14(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.17e-15WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]